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PGT-A Report Generator
Patient Information
TRF Verification (Optional)
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Page 1: Results Summary
| S.No | Sample | Result | MTcopy | Interpretation |
|---|
Page 4+: Embryo Details (Detail View)
Click each embryo header to expand and fill details.
Fast Report Generation
Output Forms:
Branding:
Grid lines:
Patients:
0 selected
Patient Editor
Select a patient from the list to edit their embryo data.
Batch Report Preview
Select a patient and click Refresh
Formats:
Select Comparison Mode
1. Select Report Directories
2. Comparison Results
Results will appear here after running comparison...
1. Manual Report Entry
- Patient Information: Enter clinician and hospital details. Use DD-MM-YYYY for all dates.
- Sample Management: Add multiple samples/embryos using the 'Number of Samples' selector.
- Live View: The side-by-side preview updates in real-time as you type for immediate verification.
- Generation: Set your output folder at the bottom and click 'Generate Report(s)'.
2. Bulk Upload & Batch Processing
- Import: Click 'Browse' to select your analysis run Excel file (requires standard 'Details' and 'summary' sheets).
- Review: Select a patient from the list to view their automatically mapped data in the editor.
- Refine: Make individual corrections in the batch editor; the live preview will follow your changes.
- Process: Use 'Generate All Reports' to export the entire batch to your chosen directory.
3. Report Comparison & Validation
- Name Validation: Select individual files and use the 'Validate Patient Names Match' button to prevent errors.
- Directory Mode: Bulk-compare two folders of reports to automatically find and analyze all matching pairs.
- Visual Cards: View structured results in the GUI with color-coded status badges and detailed discrepancy lists.
- Dashboard: Click 'View HTML Dashboard' for a premium performance summary with concordance statistics.
4. Productivity Features
- Copy Logic: Use 'Copy Last Sample' to duplicate data across multiple entries instantly.
- Drafts: Save your current work as a JSON draft to reload and finish later.
- Image Auto-Match: Place sample charts in the same folder as the Excel file for automatic bulk matching.
- Dual Export: Generate Word (DOCX) files alongside PDFs for further manual customization.
5. Color Coding System
- Red: Non-mosaic abnormalities - del/dup without %, CNV status L/G/SL/SG/SL/SG/SG/SL
- Blue: Mosaic abnormalities - del/dup/mos with %, CNV status M/ML/MG/SML/SMG/SML/SMG/SMG/SML
- Blue: Mosaic abnormalities - any result containing % (e.g., +15(~30%), dup with ~32%)
- Black: Normal/Euploid results
6. Excel File Format
- Required Sheets: 'Details' (patient info) and 'summary' (embryo results)
- Details Columns: Patient Name, Sample ID, Center name, Date of Biopsy, Date Sample Received, EMBRYOLOGIST NAME
- Summary Columns: Sample name, QC, Conclusion, Result, MTcopy, AUTOSOMES, SEX
- Note: Referring Clinician and Sample Number fields are NOT auto-filled - enter manually
7. System Requirements
- Platform: Web-based application accessible from any modern browser
- Backend: Python Flask server with ReportLab, python-docx, pandas, openpyxl
- Browser: Chrome, Firefox, Safari, or Edge (latest versions)
- Storage: Reports are generated server-side and downloaded to your device
8. Quick Start
- Log in with your credentials at the home page
- For Manual Entry: Fill patient details → Add embryo data → Generate
- For Bulk Upload: Browse Excel → Search/Select patient → Review → Generate All
- For Report Comparison: Select two PDFs → Compare → Review discrepancies
Pro Tip: Use the search box in Bulk Upload to quickly find patients by name instead of scrolling
through the list.