← Home

NIPT Report Generator

Non-Invasive Prenatal Screening (NIPS) — Manual Entry & Batch Upload

Export Settings PDF DOCX With Branding Logo

Output Folder:

Patient Information

Date of Birth / Age

Patient Name

PIN / MRN

Gestational Age

Sample ID

Collection Date

Receipt Date

Pregnancy Status

Pregnancy Type

Referring Clinician

Qualification

Hospital / Clinic

Specimen Type

Clinical Indication

Laboratory Z-Scores

Fetal DNA Fraction (%):

Chr	Z-Score

Chr	Z-Score

Report Preview

Edit any field — preview auto-refreshes after 1 second.

Click or drag Excel file (.xlsx) here…

Processing…

Patient Editor

Select a patient from the list on the left

Patient Preview

Select a patient to see preview

Comparison Mode: Directory Mode (Bulk) Individual File Mode

Select Report Directories

Manual Folder: No directory selected

Automated Folder: No directory selected

Note: Directory comparison uses the server-side folder paths. Enter paths directly or use the server folder browser.

Manual Path:

Automated Path:

Results will appear here after running comparison…

NIPT Report Generator — User Guide

Non-Invasive Prenatal Testing

1. Manual Entry Tab

Fill in patient demographics and Z-scores. The right pane shows a live PDF preview that auto-refreshes 1 second after you stop typing.

Save Draft — save all fields to a JSON file for later restoration
Load Draft — restore a previously saved state (also triggers a preview refresh)
Generate Report — export PDF and/or DOCX to your output folder
Refresh Preview — manually trigger a preview regeneration

2. Batch Upload Tab

Select an .xlsx file. All patients load into the left list. Click any name to open the full inline editor in the centre — you can edit all demographics and Z-scores without leaving this tab. The right pane shows a live preview for the selected patient.

Sheet1 — demographics (Patient Name, Sample ID, GA, etc.)
Sheet2 (optional) — Z-scores, joined on Sample ID
QC column — if present, only rows with QC = "pass" are imported
Save All Draft — save all edited batch data as JSON
Load Draft — restore a previously saved batch
Generate All Reports — export every patient in the batch
Save Individual Draft / Generate for This Patient — per-patient actions in the editor

3. Excel Column Mapping

Patient Name or Sample Name → patient name
Sample ID → sample ID
chr1, chromosome1, chrom1 → chr1 Z-score, etc.
Fetal DNA, Fetal fraction, FF → fetal fraction (%)

4. Risk Calculation

Chromosomes 13, 18, 21: Z-score > 2.8 → High risk
Sex chromosomes & other autosomes: Z-score > 6.0 → High risk
All others → Low risk

5. Report Comparison Tab

Compare Manual reports (clinician-signed) vs Automated reports (pipeline-generated). In Directory Mode files are matched by filename; in File Mode pick one PDF from each source and a detailed diff is shown.

6. Export Settings

PDF / DOCX — choose which formats to export
With Branding Logo — toggle Anderson Diagnostics letterhead
Output Folder — all generated reports are downloaded from the server to this display path (reports saved server-side)